Resources

Illumina Short-Read Sequencing

• Training;
• Documentation;
• Custom Protocol Selector.

PacBio Long-Read Sequencing

• Training;
• Documentation;
• SMRT Resources.

10× Genomics Single-Cell Sequencing Analysis

• General Support;
• Document Library & Webinars;
• Customer Developed Protocols.

Miltenyi Biotec Single-Cell Preparation

• Miltenyi University: webinars and courses;
• MACS handbook;
• Application protocols.

NCBI

• PubMed;
• BLAST;
• Submission Portal: GenBank; SRA; GEO; etc.

NGS Data Analysis

• UCLA workshops;
• NYU e-book.

Functional Annotation of Differential Gene Expression

• DAVID Bioinformatics Resources;
• NetworkAnalyst: a comprehensive network visual analytics platform for gene expression analysis.
• iDEP: an integrated web application for differential expression and pathway analysis

Microbiome

• QIIME;
• Earth Microbiome Project;
• Human Microbiome Project.

Single-Cell Analysis Portal

• Automated Single-cell Analysis Pipeline (ASAP);
• Granatum: graphical scRNA-seq analysis pipeline;
• Single Cell Portal.
• Human Cell Atlas